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DRX342254: NextSeq 550 sequencing of SAMD00451032
1 ILLUMINA (NextSeq 550) run: 81.3M spots, 6.5G bases, 2.5Gb downloads

Submitted by: NIBB
Study: Functional analysis of the SHOOTROOT genes in the moss Physcomitrium patens
show Abstracthide Abstract
Formative periclinal cell divisions are essential for three-dimensional body organization of land plants. GRAS transcription factor genes SHOOTROOT (SHR) regulates the formative periclinal cell division in the root of angiosperms. To understand the role of SHR in basal land plant lineage and infer the evolution of three-dimensional body organization in land plants, we tried to identify downstream genes of SHRs in the moss Physcomitrium patens (PpSHRs). To this end, we compared the transcriptomes of gametophore apices with leaf primordia and developing leaves, in which periclinal cell divisions take place, between wild type and the ppshr double mutant.
Sample: ppshr1 ppshr2 vegetative gametophore apex 2
SAMD00451032 • DRS233113 • All experiments • All runs
Library:
Name: s2; shr sam, rep#2
Instrument: NextSeq 550
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: SINGLE
Construction protocol: Illumina TruSeq stranded RNA-Seq
Spot descriptor:
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Runs: 1 run, 81.3M spots, 6.5G bases, 2.5Gb
Run# of Spots# of BasesSizePublished
DRR35634381,259,3036.5G2.5Gb2022-04-02

ID:
21012757

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